SABER Dashboard

Servers and Compute IDs

Summary

Test run: Jun 05, 2025 01:25
Test are run daily

Pulsar Endpoint Galaxy Server Status
it-pulsar usegalaxy_eu
it02-pulsar
it03-pulsar
fr-pulsar
be-pulsar
cz-pulsar
sk-pulsar
egi-pulsar
hcmr-gr-pulsar
bsc-pulsar
pl-pulsar
tubitak-pulsar
it-pulsar usegalaxy_it
it03-pulsar
Default

Server: usegalaxy_eu

Compute ID: it-pulsar

Successful Jobs: 2 Failed Jobs: 0 Running Jobs: 0 New Jobs: 0 Queued Jobs: 0 Waiting Jobs: 0
Successful Jobs 2
Failed Jobs 0
Running Jobs 0
New Jobs 0
Queued Jobs 0
Waiting Jobs 0

Successful Jobs

Job ID: 11ac94870d0bb33a28503ebd5595e262 (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1

Galaxy v24.2 Created: 2025-06-05 01:27:22.697955 Updated: 2025-06-05 01:32:01.745602

Job Information

History ID 45d63e8eca00c399
Exit Code 0
Command Line
set -o | grep -q pipefail && set -o pipefail; bowtie2-build --threads ${GALAXY_SLOTS:-4} '/data/share/staging/84472253/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome && ln -s -f '/data/share/staging/84472253/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome.fa && ln -f -s '/data/share/staging/84472253/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' input_f.fastq && THREADS=${GALAXY_SLOTS:-4} && if [ "$THREADS" -gt 1 ]; then (( THREADS-- )); fi && bowtie2 -p "$THREADS" -x 'genome' -U 'input_f.fastq' | samtools sort -l 0 -T "${TMPDIR:-.}" -O bam | samtools view --no-PG -O bam -@ ${GALAXY_SLOTS:-1} -o '/data/share/staging/84472253/outputs/dataset_da5ecc5c-edf7-4eb1-bffd-2553924aa0e2.dat'

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/mulled-v2-c742dccc9d8fabfcff2af0d8d6799dbc711366cf:a2e4688a25bd1726a756713d5233a63a5ac7f597-0
Container Type singularity
hostname it01-exec-node-0-usegalaxy-it.novalocal
Cores Allocated 1
Memory Allocated (MB) 20480
Job Start Time 2025-06-05 03:30:45
Job End Time 2025-06-05 03:31:45
Job Runtime (Wall Clock) 1 minute
CPU usage time 1 minute
CPU user time 1 minute
CPU system time 6.5889540 seconds
Number of processes belonging to this cgroup killed by any kind of OOM killer 0
Max memory usage recorded 545.7 MB

Inputs & Outputs

Type Name ID UUID
Input library|input_1 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Input reference_genome|own_file 4838ba20a6d86765e8f6ef1a476e048d 8cbf333d-a767-4232-84f4-bd03bc720c4c
Output output 4838ba20a6d86765df784e14502be3f1 da5ecc5c-edf7-4eb1-bffd-2553924aa0e2

Job ID: 11ac94870d0bb33adf15d471cbfbc478 (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1

Galaxy v24.2 Created: 2025-06-05 01:27:22.604099 Updated: 2025-06-05 01:30:51.080840

Job Information

History ID 45d63e8eca00c399
Exit Code 0
Command Line
ln -s '/data/share/staging/84472252/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' '1_reads' && mkdir -p '/data/share/staging/84472252/outputs/dataset_8cb1ffd5-4dd5-45b5-83f3-94e0dfc337ad_files' && fastqc --outdir '/data/share/staging/84472252/outputs/dataset_8cb1ffd5-4dd5-45b5-83f3-94e0dfc337ad_files' --threads ${GALAXY_SLOTS:-2} --dir ${TEMP:-$_GALAXY_JOB_TMP_DIR} --quiet --extract --kmers 7 -f 'fastq' '1_reads' && cp '/data/share/staging/84472252/outputs/dataset_8cb1ffd5-4dd5-45b5-83f3-94e0dfc337ad_files'/*/fastqc_data.txt output.txt && cp '/data/share/staging/84472252/outputs/dataset_8cb1ffd5-4dd5-45b5-83f3-94e0dfc337ad_files'/*\.html output.html

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/fastqc:0.12.1--hdfd78af_0
Container Type singularity
hostname it01-exec-node-0-usegalaxy-it.novalocal
Cores Allocated 1
Memory Allocated (MB) 5734
Job Start Time 2025-06-05 03:28:26
Job End Time 2025-06-05 03:30:38
Job Runtime (Wall Clock) 2 minutes
CPU usage time 14.8354180 seconds
CPU user time 12.5917370 seconds
CPU system time 2.2436810 seconds
Number of processes belonging to this cgroup killed by any kind of OOM killer 0
Max memory usage recorded 584.2 MB

Inputs & Outputs

Type Name ID UUID
Input input_file 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Output html_file 4838ba20a6d8676509bf43e75c59d958 8cb1ffd5-4dd5-45b5-83f3-94e0dfc337ad
Output text_file 4838ba20a6d86765319b80cfc999f241 c9181b6f-bdad-43bc-b71a-e418907ba675

Failed Jobs

No failed jobs found.

Running Jobs

No running jobs found.

New Jobs

No new jobs found.

Queued Jobs

No queued jobs found.

Waiting Jobs

No waiting jobs found.

Compute ID: it02-pulsar

Successful Jobs: 2 Failed Jobs: 0 Running Jobs: 0 New Jobs: 0 Queued Jobs: 0 Waiting Jobs: 0
Successful Jobs 2
Failed Jobs 0
Running Jobs 0
New Jobs 0
Queued Jobs 0
Waiting Jobs 0

Successful Jobs

Job ID: 11ac94870d0bb33aabb851e6685519b7 (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1

Galaxy v24.2 Created: 2025-06-05 01:32:25.450181 Updated: 2025-06-05 01:39:23.610227

Job Information

History ID 45d63e8eca00c399
Exit Code 0
Command Line
set -o | grep -q pipefail && set -o pipefail; bowtie2-build --threads ${GALAXY_SLOTS:-4} '/data/share/staging/84472790/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome && ln -s -f '/data/share/staging/84472790/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome.fa && ln -f -s '/data/share/staging/84472790/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' input_f.fastq && THREADS=${GALAXY_SLOTS:-4} && if [ "$THREADS" -gt 1 ]; then (( THREADS-- )); fi && bowtie2 -p "$THREADS" -x 'genome' -U 'input_f.fastq' | samtools sort -l 0 -T "${TMPDIR:-.}" -O bam | samtools view --no-PG -O bam -@ ${GALAXY_SLOTS:-1} -o '/data/share/staging/84472790/outputs/dataset_97dbd752-e4cd-467d-a603-76708b1ace3a.dat'

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/mulled-v2-c742dccc9d8fabfcff2af0d8d6799dbc711366cf:a2e4688a25bd1726a756713d5233a63a5ac7f597-0
Container Type singularity
hostname it02-exec-node-0-usegalaxy-eu.novalocal
Cores Allocated 1
Memory Allocated (MB) 20480
Job Start Time 2025-06-05 03:33:27
Job End Time 2025-06-05 03:34:09
Job Runtime (Wall Clock) 42 seconds

Inputs & Outputs

Type Name ID UUID
Input library|input_1 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Input reference_genome|own_file 4838ba20a6d86765e8f6ef1a476e048d 8cbf333d-a767-4232-84f4-bd03bc720c4c
Output output 4838ba20a6d86765768ec421259b707e 97dbd752-e4cd-467d-a603-76708b1ace3a

Job ID: 11ac94870d0bb33ab37490541fb06268 (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1

Galaxy v24.2 Created: 2025-06-05 01:32:25.363740 Updated: 2025-06-05 01:37:41.316907

Job Information

History ID 45d63e8eca00c399
Exit Code 0
Command Line
ln -s '/data/share/staging/84472789/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' '1_reads' && mkdir -p '/data/share/staging/84472789/outputs/dataset_23731d72-76f9-466a-8624-1b42f2b3b744_files' && fastqc --outdir '/data/share/staging/84472789/outputs/dataset_23731d72-76f9-466a-8624-1b42f2b3b744_files' --threads ${GALAXY_SLOTS:-2} --dir ${TEMP:-$_GALAXY_JOB_TMP_DIR} --quiet --extract --kmers 7 -f 'fastq' '1_reads' && cp '/data/share/staging/84472789/outputs/dataset_23731d72-76f9-466a-8624-1b42f2b3b744_files'/*/fastqc_data.txt output.txt && cp '/data/share/staging/84472789/outputs/dataset_23731d72-76f9-466a-8624-1b42f2b3b744_files'/*\.html output.html

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/fastqc:0.12.1--hdfd78af_0
Container Type singularity
hostname it02-exec-node-0-usegalaxy-eu.novalocal
Cores Allocated 1
Memory Allocated (MB) 5734
Job Start Time 2025-06-05 03:28:07
Job End Time 2025-06-05 03:32:30
Job Runtime (Wall Clock) 4 minutes

Inputs & Outputs

Type Name ID UUID
Input input_file 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Output html_file 4838ba20a6d867651917bd7f08ad4099 23731d72-76f9-466a-8624-1b42f2b3b744
Output text_file 4838ba20a6d86765f6f666b1ae17bc67 a6195994-ea2d-4e29-a9f0-983489b0561f

Failed Jobs

No failed jobs found.

Running Jobs

No running jobs found.

New Jobs

No new jobs found.

Queued Jobs

No queued jobs found.

Waiting Jobs

No waiting jobs found.

Compute ID: it03-pulsar

Successful Jobs: 2 Failed Jobs: 0 Running Jobs: 0 New Jobs: 0 Queued Jobs: 0 Waiting Jobs: 0
Successful Jobs 2
Failed Jobs 0
Running Jobs 0
New Jobs 0
Queued Jobs 0
Waiting Jobs 0

Successful Jobs

Job ID: 11ac94870d0bb33a1fc59df2cfd23879 (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1

Galaxy v24.2 Created: 2025-06-05 01:39:59.058367 Updated: 2025-06-05 01:45:03.194349

Job Information

History ID 45d63e8eca00c399
Exit Code 0
Command Line
set -o | grep -q pipefail && set -o pipefail; bowtie2-build --threads ${GALAXY_SLOTS:-4} '/data/share/staging/84472937/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome && ln -s -f '/data/share/staging/84472937/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome.fa && ln -f -s '/data/share/staging/84472937/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' input_f.fastq && THREADS=${GALAXY_SLOTS:-4} && if [ "$THREADS" -gt 1 ]; then (( THREADS-- )); fi && bowtie2 -p "$THREADS" -x 'genome' -U 'input_f.fastq' | samtools sort -l 0 -T "${TMPDIR:-.}" -O bam | samtools view --no-PG -O bam -@ ${GALAXY_SLOTS:-1} -o '/data/share/staging/84472937/outputs/dataset_9e000275-79d2-4cd9-b03a-d838cb5838b2.dat'

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/mulled-v2-c742dccc9d8fabfcff2af0d8d6799dbc711366cf:a2e4688a25bd1726a756713d5233a63a5ac7f597-0
Container Type singularity
hostname it03-exec-node-0-usegalaxy-it.garr.cloud.pa
Cores Allocated 1
Memory Allocated (MB) 20480
Job Start Time 2025-06-05 03:43:10
Job End Time 2025-06-05 03:43:56
Job Runtime (Wall Clock) 46 seconds

Inputs & Outputs

Type Name ID UUID
Input library|input_1 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Input reference_genome|own_file 4838ba20a6d86765e8f6ef1a476e048d 8cbf333d-a767-4232-84f4-bd03bc720c4c
Output output 4838ba20a6d867652701d8e9c1b73fc7 9e000275-79d2-4cd9-b03a-d838cb5838b2

Job ID: 11ac94870d0bb33a57fddc61cd01ccb8 (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1

Galaxy v24.2 Created: 2025-06-05 01:39:58.978011 Updated: 2025-06-05 01:43:38.640325

Job Information

History ID 45d63e8eca00c399
Exit Code 0
Command Line
ln -s '/data/share/staging/84472936/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' '1_reads' && mkdir -p '/data/share/staging/84472936/outputs/dataset_a079ab53-0696-446a-98a7-15c1e219b31d_files' && fastqc --outdir '/data/share/staging/84472936/outputs/dataset_a079ab53-0696-446a-98a7-15c1e219b31d_files' --threads ${GALAXY_SLOTS:-2} --dir ${TEMP:-$_GALAXY_JOB_TMP_DIR} --quiet --extract --kmers 7 -f 'fastq' '1_reads' && cp '/data/share/staging/84472936/outputs/dataset_a079ab53-0696-446a-98a7-15c1e219b31d_files'/*/fastqc_data.txt output.txt && cp '/data/share/staging/84472936/outputs/dataset_a079ab53-0696-446a-98a7-15c1e219b31d_files'/*\.html output.html

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/fastqc:0.12.1--hdfd78af_0
Container Type singularity
hostname it03-exec-node-0-usegalaxy-it.garr.cloud.pa
Cores Allocated 1
Memory Allocated (MB) 5734
Job Start Time 2025-06-05 03:40:09
Job End Time 2025-06-05 03:42:35
Job Runtime (Wall Clock) 2 minutes

Inputs & Outputs

Type Name ID UUID
Input input_file 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Output html_file 4838ba20a6d86765dbdc840a92c54b94 a079ab53-0696-446a-98a7-15c1e219b31d
Output text_file 4838ba20a6d867657be60aad8af6f96b 73e6a80a-f84c-4fe6-adee-a2bb29635382

Failed Jobs

No failed jobs found.

Running Jobs

No running jobs found.

New Jobs

No new jobs found.

Queued Jobs

No queued jobs found.

Waiting Jobs

No waiting jobs found.

Compute ID: fr-pulsar

Successful Jobs: 0 Failed Jobs: 0 Running Jobs: 0 New Jobs: 0 Queued Jobs: 2 Waiting Jobs: 0
Successful Jobs 0
Failed Jobs 0
Running Jobs 0
New Jobs 0
Queued Jobs 2
Waiting Jobs 0

Successful Jobs

No successful jobs found.

Failed Jobs

No failed jobs found.

Running Jobs

No running jobs found.

New Jobs

No new jobs found.

Queued Jobs

Job ID: 11ac94870d0bb33a27f052f37b709969 (Status: queued)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1

Galaxy v24.2 Created: 2025-06-05 01:45:37.252482 Updated: 2025-06-05 01:45:58.712006

Job Information

History ID 45d63e8eca00c399
Exit Code None
Command Line
set -o | grep -q pipefail && set -o pipefail; bowtie2-build --threads ${GALAXY_SLOTS:-4} '/data/share/staging/84473172/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome && ln -s -f '/data/share/staging/84473172/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome.fa && ln -f -s '/data/share/staging/84473172/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' input_f.fastq && THREADS=${GALAXY_SLOTS:-4} && if [ "$THREADS" -gt 1 ]; then (( THREADS-- )); fi && bowtie2 -p "$THREADS" -x 'genome' -U 'input_f.fastq' | samtools sort -l 0 -T "${TMPDIR:-.}" -O bam | samtools view --no-PG -O bam -@ ${GALAXY_SLOTS:-1} -o '/data/share/staging/84473172/outputs/dataset_3a6dda33-c39d-40bb-9617-182a9a219551.dat'

Job Metrics

Metric Value

Inputs & Outputs

Type Name ID UUID
Input library|input_1 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Input reference_genome|own_file 4838ba20a6d86765e8f6ef1a476e048d 8cbf333d-a767-4232-84f4-bd03bc720c4c
Output output 4838ba20a6d8676502d80ff6bc31e370 3a6dda33-c39d-40bb-9617-182a9a219551

Job ID: 11ac94870d0bb33a5fa1f527173f7e96 (Status: queued)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1

Galaxy v24.2 Created: 2025-06-05 01:45:37.165320 Updated: 2025-06-05 01:45:53.903557

Job Information

History ID 45d63e8eca00c399
Exit Code None
Command Line
ln -s '/data/share/staging/84473171/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' '1_reads' && mkdir -p '/data/share/staging/84473171/outputs/dataset_dd375a32-2104-456f-a15d-0d528344d5d3_files' && fastqc --outdir '/data/share/staging/84473171/outputs/dataset_dd375a32-2104-456f-a15d-0d528344d5d3_files' --threads ${GALAXY_SLOTS:-2} --dir ${TEMP:-$_GALAXY_JOB_TMP_DIR} --quiet --extract --kmers 7 -f 'fastq' '1_reads' && cp '/data/share/staging/84473171/outputs/dataset_dd375a32-2104-456f-a15d-0d528344d5d3_files'/*/fastqc_data.txt output.txt && cp '/data/share/staging/84473171/outputs/dataset_dd375a32-2104-456f-a15d-0d528344d5d3_files'/*\.html output.html

Job Metrics

Metric Value

Inputs & Outputs

Type Name ID UUID
Input input_file 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Output html_file 4838ba20a6d867658c3d01dedc153430 dd375a32-2104-456f-a15d-0d528344d5d3
Output text_file 4838ba20a6d867652f392dc1795e4bc8 3d454235-92eb-4989-8bf1-4aae7b684f8e

Waiting Jobs

No waiting jobs found.

Compute ID: be-pulsar

Successful Jobs: 1 Failed Jobs: 1 Running Jobs: 0 New Jobs: 0 Queued Jobs: 0 Waiting Jobs: 0
Successful Jobs 1
Failed Jobs 1
Running Jobs 0
New Jobs 0
Queued Jobs 0
Waiting Jobs 0

Successful Jobs

Job ID: 11ac94870d0bb33aad28d009044abb74 (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1

Galaxy v24.2 Created: 2025-06-05 02:25:20.360413 Updated: 2025-06-05 02:27:12.554381

Job Information

History ID 45d63e8eca00c399
Exit Code 0
Command Line
ln -s '/data/share/staging/84475668/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' '1_reads' && mkdir -p '/data/share/staging/84475668/outputs/dataset_dbc4c200-0f5a-4301-9b2c-2e8f6d8611d9_files' && fastqc --outdir '/data/share/staging/84475668/outputs/dataset_dbc4c200-0f5a-4301-9b2c-2e8f6d8611d9_files' --threads ${GALAXY_SLOTS:-2} --dir ${TEMP:-$_GALAXY_JOB_TMP_DIR} --quiet --extract --kmers 7 -f 'fastq' '1_reads' && cp '/data/share/staging/84475668/outputs/dataset_dbc4c200-0f5a-4301-9b2c-2e8f6d8611d9_files'/*/fastqc_data.txt output.txt && cp '/data/share/staging/84475668/outputs/dataset_dbc4c200-0f5a-4301-9b2c-2e8f6d8611d9_files'/*\.html output.html

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/fastqc:0.12.1--hdfd78af_0
Container Type singularity
hostname vgcn-pulsar-exec-node-0.usegalaxy.be
Cores Allocated 1
Memory Allocated (MB) 5734
Job Start Time 2025-06-05 04:06:56
Job End Time 2025-06-05 04:08:04
Job Runtime (Wall Clock) 1 minute

Inputs & Outputs

Type Name ID UUID
Input input_file 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Output html_file 4838ba20a6d867651d4bea0b02d27fb1 dbc4c200-0f5a-4301-9b2c-2e8f6d8611d9
Output text_file 4838ba20a6d867655cd184820c93b495 c3068ee2-2c26-4ad0-822e-533ef57bebe9

Failed Jobs

Job ID: 11ac94870d0bb33af455f9ce7866ea29 (Status: error)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1

Galaxy v24.2 Created: 2025-06-05 02:25:20.522418 Updated: 2025-06-05 02:25:22.492016

Job Information

History ID 45d63e8eca00c399
Exit Code None
Command Line
None

Job Metrics

Metric Value

Inputs & Outputs

Type Name ID UUID
Input library|input_1 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Input reference_genome|own_file 4838ba20a6d86765e8f6ef1a476e048d 8cbf333d-a767-4232-84f4-bd03bc720c4c
Output output 4838ba20a6d867654118f9fd221f7b3f a70d67a1-a67c-4e53-b95e-2c02413adc35

Running Jobs

No running jobs found.

New Jobs

No new jobs found.

Queued Jobs

No queued jobs found.

Waiting Jobs

No waiting jobs found.

Compute ID: cz-pulsar

Successful Jobs: 2 Failed Jobs: 0 Running Jobs: 0 New Jobs: 0 Queued Jobs: 0 Waiting Jobs: 0
Successful Jobs 2
Failed Jobs 0
Running Jobs 0
New Jobs 0
Queued Jobs 0
Waiting Jobs 0

Successful Jobs

Job ID: 11ac94870d0bb33ad71112e6938d5ba1 (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1

Galaxy v24.2 Created: 2025-06-05 02:27:24.172571 Updated: 2025-06-05 02:30:04.085084

Job Information

History ID 45d63e8eca00c399
Exit Code 0
Command Line
set -o | grep -q pipefail && set -o pipefail; bowtie2-build --threads ${GALAXY_SLOTS:-4} '/storage/praha5-elixir/home/galaxyeu/pulsar-eu/files/staging/84475672/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome && ln -s -f '/storage/praha5-elixir/home/galaxyeu/pulsar-eu/files/staging/84475672/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome.fa && ln -f -s '/storage/praha5-elixir/home/galaxyeu/pulsar-eu/files/staging/84475672/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' input_f.fastq && THREADS=${GALAXY_SLOTS:-4} && if [ "$THREADS" -gt 1 ]; then (( THREADS-- )); fi && bowtie2 -p "$THREADS" -x 'genome' -U 'input_f.fastq' | samtools sort -l 0 -T "${TMPDIR:-.}" -O bam | samtools view --no-PG -O bam -@ ${GALAXY_SLOTS:-1} -o '/storage/praha5-elixir/home/galaxyeu/pulsar-eu/files/staging/84475672/outputs/dataset_150392b6-8171-4db7-a174-6a50e4be40db.dat'

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/mulled-v2-c742dccc9d8fabfcff2af0d8d6799dbc711366cf:a2e4688a25bd1726a756713d5233a63a5ac7f597-0
Container Type singularity
Cores Allocated 1
Memory Allocated (MB) 20480
Job Start Time 2025-06-05 04:28:28
Job End Time 2025-06-05 04:29:36
Job Runtime (Wall Clock) 1 minute

Inputs & Outputs

Type Name ID UUID
Input library|input_1 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Input reference_genome|own_file 4838ba20a6d86765e8f6ef1a476e048d 8cbf333d-a767-4232-84f4-bd03bc720c4c
Output output 4838ba20a6d86765c73a1189cecef44d 150392b6-8171-4db7-a174-6a50e4be40db

Job ID: 11ac94870d0bb33a6221928d6af9dfaf (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1

Galaxy v24.2 Created: 2025-06-05 02:27:24.079918 Updated: 2025-06-05 02:29:29.620173

Job Information

History ID 45d63e8eca00c399
Exit Code 0
Command Line
ln -s '/storage/praha5-elixir/home/galaxyeu/pulsar-eu/files/staging/84475671/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' '1_reads' && mkdir -p '/storage/praha5-elixir/home/galaxyeu/pulsar-eu/files/staging/84475671/outputs/dataset_d3d6a17f-cb53-40d6-bad6-551a65d44758_files' && fastqc --outdir '/storage/praha5-elixir/home/galaxyeu/pulsar-eu/files/staging/84475671/outputs/dataset_d3d6a17f-cb53-40d6-bad6-551a65d44758_files' --threads ${GALAXY_SLOTS:-2} --dir ${TEMP:-$_GALAXY_JOB_TMP_DIR} --quiet --extract --kmers 7 -f 'fastq' '1_reads' && cp '/storage/praha5-elixir/home/galaxyeu/pulsar-eu/files/staging/84475671/outputs/dataset_d3d6a17f-cb53-40d6-bad6-551a65d44758_files'/*/fastqc_data.txt output.txt && cp '/storage/praha5-elixir/home/galaxyeu/pulsar-eu/files/staging/84475671/outputs/dataset_d3d6a17f-cb53-40d6-bad6-551a65d44758_files'/*\.html output.html

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/fastqc:0.12.1--hdfd78af_0
Container Type singularity
Cores Allocated 1
Memory Allocated (MB) 5734
Job Start Time 2025-06-05 04:28:27
Job End Time 2025-06-05 04:29:04
Job Runtime (Wall Clock) 37 seconds

Inputs & Outputs

Type Name ID UUID
Input input_file 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Output html_file 4838ba20a6d86765adcd11a3fcefe2ee d3d6a17f-cb53-40d6-bad6-551a65d44758
Output text_file 4838ba20a6d86765a6d5b9c1dfe4d4aa 89dc146c-29b5-491b-a57b-23d79c52f475

Failed Jobs

No failed jobs found.

Running Jobs

No running jobs found.

New Jobs

No new jobs found.

Queued Jobs

No queued jobs found.

Waiting Jobs

No waiting jobs found.

Compute ID: sk-pulsar

Successful Jobs: 2 Failed Jobs: 0 Running Jobs: 0 New Jobs: 0 Queued Jobs: 0 Waiting Jobs: 0
Successful Jobs 2
Failed Jobs 0
Running Jobs 0
New Jobs 0
Queued Jobs 0
Waiting Jobs 0

Successful Jobs

Job ID: 11ac94870d0bb33af2c57022d7bae044 (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1

Galaxy v24.2 Created: 2025-06-05 02:30:30.884620 Updated: 2025-06-05 02:33:33.858509

Job Information

History ID 45d63e8eca00c399
Exit Code 0
Command Line
set -o | grep -q pipefail && set -o pipefail; bowtie2-build --threads ${GALAXY_SLOTS:-4} '/data/share/staging/84475722/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome && ln -s -f '/data/share/staging/84475722/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome.fa && ln -f -s '/data/share/staging/84475722/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' input_f.fastq && THREADS=${GALAXY_SLOTS:-4} && if [ "$THREADS" -gt 1 ]; then (( THREADS-- )); fi && bowtie2 -p "$THREADS" -x 'genome' -U 'input_f.fastq' | samtools sort -l 0 -T "${TMPDIR:-.}" -O bam | samtools view --no-PG -O bam -@ ${GALAXY_SLOTS:-1} -o '/data/share/staging/84475722/outputs/dataset_cbc87ae3-bfed-4075-930f-6ae8fa061512.dat'

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/mulled-v2-c742dccc9d8fabfcff2af0d8d6799dbc711366cf:a2e4688a25bd1726a756713d5233a63a5ac7f597-0
Container Type singularity
hostname pulsar-exec-node-1.novalocal
Cores Allocated 1
Memory Allocated (MB) 20480
Job Start Time 2025-06-05 04:31:14
Job End Time 2025-06-05 04:33:20
Job Runtime (Wall Clock) 2 minutes

Inputs & Outputs

Type Name ID UUID
Input library|input_1 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Input reference_genome|own_file 4838ba20a6d86765e8f6ef1a476e048d 8cbf333d-a767-4232-84f4-bd03bc720c4c
Output output 4838ba20a6d8676538b1b8e8f8e1cd74 cbc87ae3-bfed-4075-930f-6ae8fa061512

Job ID: 11ac94870d0bb33a795c431d679bf981 (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1

Galaxy v24.2 Created: 2025-06-05 02:30:30.794871 Updated: 2025-06-05 02:32:02.224400

Job Information

History ID 45d63e8eca00c399
Exit Code 0
Command Line
ln -s '/data/share/staging/84475721/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' '1_reads' && mkdir -p '/data/share/staging/84475721/outputs/dataset_86ce6ab9-6265-464b-ba9b-78b5366a9dca_files' && fastqc --outdir '/data/share/staging/84475721/outputs/dataset_86ce6ab9-6265-464b-ba9b-78b5366a9dca_files' --threads ${GALAXY_SLOTS:-2} --dir ${TEMP:-$_GALAXY_JOB_TMP_DIR} --quiet --extract --kmers 7 -f 'fastq' '1_reads' && cp '/data/share/staging/84475721/outputs/dataset_86ce6ab9-6265-464b-ba9b-78b5366a9dca_files'/*/fastqc_data.txt output.txt && cp '/data/share/staging/84475721/outputs/dataset_86ce6ab9-6265-464b-ba9b-78b5366a9dca_files'/*\.html output.html

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/fastqc:0.12.1--hdfd78af_0
Container Type singularity
hostname pulsar-exec-node-0.novalocal
Cores Allocated 1
Memory Allocated (MB) 5734
Job Start Time 2025-06-05 04:31:14
Job End Time 2025-06-05 04:31:50
Job Runtime (Wall Clock) 36 seconds

Inputs & Outputs

Type Name ID UUID
Input input_file 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Output html_file 4838ba20a6d86765844069defc3d181b 86ce6ab9-6265-464b-ba9b-78b5366a9dca
Output text_file 4838ba20a6d86765ead434ce025731af 667d527b-a93e-4f46-ad35-17fdcad4cad3

Failed Jobs

No failed jobs found.

Running Jobs

No running jobs found.

New Jobs

No new jobs found.

Queued Jobs

No queued jobs found.

Waiting Jobs

No waiting jobs found.

Compute ID: egi-pulsar

Successful Jobs: 1 Failed Jobs: 1 Running Jobs: 0 New Jobs: 0 Queued Jobs: 0 Waiting Jobs: 0
Successful Jobs 1
Failed Jobs 1
Running Jobs 0
New Jobs 0
Queued Jobs 0
Waiting Jobs 0

Successful Jobs

Job ID: 11ac94870d0bb33a1ae3406a81f95bc5 (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1

Galaxy v24.2 Created: 2025-06-05 02:34:02.722033 Updated: 2025-06-05 02:36:09.376135

Job Information

History ID 45d63e8eca00c399
Exit Code 0
Command Line
ln -s '/data/share/staging/84475761/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' '1_reads' && mkdir -p '/data/share/staging/84475761/outputs/dataset_9c45aa79-70db-44a7-8b27-100b6ef56fd0_files' && fastqc --outdir '/data/share/staging/84475761/outputs/dataset_9c45aa79-70db-44a7-8b27-100b6ef56fd0_files' --threads ${GALAXY_SLOTS:-2} --dir ${TEMP:-$_GALAXY_JOB_TMP_DIR} --quiet --extract --kmers 7 -f 'fastq' '1_reads' && cp '/data/share/staging/84475761/outputs/dataset_9c45aa79-70db-44a7-8b27-100b6ef56fd0_files'/*/fastqc_data.txt output.txt && cp '/data/share/staging/84475761/outputs/dataset_9c45aa79-70db-44a7-8b27-100b6ef56fd0_files'/*\.html output.html

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/fastqc:0.12.1--hdfd78af_0
Container Type singularity

Inputs & Outputs

Type Name ID UUID
Input input_file 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Output html_file 4838ba20a6d86765c524b44c9c703e4e 9c45aa79-70db-44a7-8b27-100b6ef56fd0
Output text_file 4838ba20a6d86765e1cef4ceb74c6a91 542b375c-2753-4e35-b773-87c904a14861

Failed Jobs

Job ID: 11ac94870d0bb33aed6328397acfdc63 (Status: error)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1

Galaxy v24.2 Created: 2025-06-05 02:34:02.808568 Updated: 2025-06-05 02:34:04.518941

Job Information

History ID 45d63e8eca00c399
Exit Code None
Command Line
None

Job Metrics

Metric Value

Inputs & Outputs

Type Name ID UUID
Input library|input_1 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Input reference_genome|own_file 4838ba20a6d86765e8f6ef1a476e048d 8cbf333d-a767-4232-84f4-bd03bc720c4c
Output output 4838ba20a6d86765fa89a11cbdfd0b68 d720ee39-9a92-4ceb-a288-9aefd8351b26

Running Jobs

No running jobs found.

New Jobs

No new jobs found.

Queued Jobs

No queued jobs found.

Waiting Jobs

No waiting jobs found.

Compute ID: hcmr-gr-pulsar

Successful Jobs: 0 Failed Jobs: 2 Running Jobs: 0 New Jobs: 0 Queued Jobs: 0 Waiting Jobs: 0
Successful Jobs 0
Failed Jobs 2
Running Jobs 0
New Jobs 0
Queued Jobs 0
Waiting Jobs 0

Successful Jobs

No successful jobs found.

Failed Jobs

Job ID: 11ac94870d0bb33acdb2b0c6ec355af8 (Status: error)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1

Galaxy v24.2 Created: 2025-06-05 02:36:37.198272 Updated: 2025-06-05 02:38:21.840812

Job Information

History ID 45d63e8eca00c399
Exit Code 1
Command Line
ln -s '/data/share/staging/84475768/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' '1_reads' && mkdir -p '/data/share/staging/84475768/outputs/dataset_3b5acde2-9bcf-4b6b-8c0d-47665fbc6b67_files' && fastqc --outdir '/data/share/staging/84475768/outputs/dataset_3b5acde2-9bcf-4b6b-8c0d-47665fbc6b67_files' --threads ${GALAXY_SLOTS:-2} --dir ${TEMP:-$_GALAXY_JOB_TMP_DIR} --quiet --extract --kmers 7 -f 'fastq' '1_reads' && cp '/data/share/staging/84475768/outputs/dataset_3b5acde2-9bcf-4b6b-8c0d-47665fbc6b67_files'/*/fastqc_data.txt output.txt && cp '/data/share/staging/84475768/outputs/dataset_3b5acde2-9bcf-4b6b-8c0d-47665fbc6b67_files'/*\.html output.html

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/fastqc:0.12.1--hdfd78af_0
Container Type singularity
Cores Allocated 1
Memory Allocated (MB) 5734
Job Start Time 2025-06-05 04:37:15
Job End Time 2025-06-05 04:38:08
Job Runtime (Wall Clock) 53 seconds

Inputs & Outputs

Type Name ID UUID
Input input_file 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Output html_file 4838ba20a6d867657a2945ab1d4eb0f2 3b5acde2-9bcf-4b6b-8c0d-47665fbc6b67
Output text_file 4838ba20a6d86765a69e7143bc86dc83 abde8e7f-47db-491d-b426-32412907b782

Job ID: 11ac94870d0bb33a2372883be8dd103d (Status: error)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1

Galaxy v24.2 Created: 2025-06-05 02:36:37.295395 Updated: 2025-06-05 02:38:21.179599

Job Information

History ID 45d63e8eca00c399
Exit Code 1
Command Line
set -o | grep -q pipefail && set -o pipefail; bowtie2-build --threads ${GALAXY_SLOTS:-4} '/data/share/staging/84475769/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome && ln -s -f '/data/share/staging/84475769/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome.fa && ln -f -s '/data/share/staging/84475769/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' input_f.fastq && THREADS=${GALAXY_SLOTS:-4} && if [ "$THREADS" -gt 1 ]; then (( THREADS-- )); fi && bowtie2 -p "$THREADS" -x 'genome' -U 'input_f.fastq' | samtools sort -l 0 -T "${TMPDIR:-.}" -O bam | samtools view --no-PG -O bam -@ ${GALAXY_SLOTS:-1} -o '/data/share/staging/84475769/outputs/dataset_eeb2e72c-5082-4bd6-aae1-9a4583e0d1bb.dat'

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/mulled-v2-c742dccc9d8fabfcff2af0d8d6799dbc711366cf:a2e4688a25bd1726a756713d5233a63a5ac7f597-0
Container Type singularity
Cores Allocated 1
Memory Allocated (MB) 20480
Job Start Time 2025-06-05 04:37:23
Job End Time 2025-06-05 04:38:08
Job Runtime (Wall Clock) 45 seconds

Inputs & Outputs

Type Name ID UUID
Input library|input_1 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Input reference_genome|own_file 4838ba20a6d86765e8f6ef1a476e048d 8cbf333d-a767-4232-84f4-bd03bc720c4c
Output output 4838ba20a6d86765daba13f2fe040105 eeb2e72c-5082-4bd6-aae1-9a4583e0d1bb

Running Jobs

No running jobs found.

New Jobs

No new jobs found.

Queued Jobs

No queued jobs found.

Waiting Jobs

No waiting jobs found.

Compute ID: bsc-pulsar

Successful Jobs: 0 Failed Jobs: 1 Running Jobs: 0 New Jobs: 0 Queued Jobs: 1 Waiting Jobs: 0
Successful Jobs 0
Failed Jobs 1
Running Jobs 0
New Jobs 0
Queued Jobs 1
Waiting Jobs 0

Successful Jobs

No successful jobs found.

Failed Jobs

Job ID: 11ac94870d0bb33acdaaed44e071556a (Status: error)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1

Galaxy v24.2 Created: 2025-06-05 02:38:38.384985 Updated: 2025-06-05 02:39:01.800874

Job Information

History ID 45d63e8eca00c399
Exit Code None
Command Line
None

Job Metrics

Metric Value

Inputs & Outputs

Type Name ID UUID
Input input_file 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Output html_file 4838ba20a6d8676578fd431a0fb9dcb8 080a6b1e-84f5-4969-b7e0-bf862b376c9b
Output text_file 4838ba20a6d86765eac758378cc817f0 3bf8c4e3-d3cb-4d5e-a505-a63dfa94639e

Running Jobs

No running jobs found.

New Jobs

No new jobs found.

Queued Jobs

Job ID: 11ac94870d0bb33a359a9e88c3087365 (Status: queued)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1

Galaxy v24.2 Created: 2025-06-05 02:38:38.476734 Updated: 2025-06-05 02:39:01.040028

Job Information

History ID 45d63e8eca00c399
Exit Code None
Command Line
set -o | grep -q pipefail && set -o pipefail; bowtie2-build --threads ${GALAXY_SLOTS:-4} '/data/share/staging/84475780/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome && ln -s -f '/data/share/staging/84475780/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome.fa && ln -f -s '/data/share/staging/84475780/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' input_f.fastq && THREADS=${GALAXY_SLOTS:-4} && if [ "$THREADS" -gt 1 ]; then (( THREADS-- )); fi && bowtie2 -p "$THREADS" -x 'genome' -U 'input_f.fastq' | samtools sort -l 0 -T "${TMPDIR:-.}" -O bam | samtools view --no-PG -O bam -@ ${GALAXY_SLOTS:-1} -o '/data/share/staging/84475780/outputs/dataset_d719acab-6530-4665-8dc8-bff2873f806a.dat'

Job Metrics

Metric Value

Inputs & Outputs

Type Name ID UUID
Input library|input_1 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Input reference_genome|own_file 4838ba20a6d86765e8f6ef1a476e048d 8cbf333d-a767-4232-84f4-bd03bc720c4c
Output output 4838ba20a6d86765d6302772b7c224fa d719acab-6530-4665-8dc8-bff2873f806a

Waiting Jobs

No waiting jobs found.

Compute ID: pl-pulsar

Successful Jobs: 0 Failed Jobs: 2 Running Jobs: 0 New Jobs: 0 Queued Jobs: 0 Waiting Jobs: 0
Successful Jobs 0
Failed Jobs 2
Running Jobs 0
New Jobs 0
Queued Jobs 0
Waiting Jobs 0

Successful Jobs

No successful jobs found.

Failed Jobs

Job ID: 11ac94870d0bb33a493271bf5f0a6fe5 (Status: error)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1

Galaxy v24.2 Created: 2025-06-05 03:18:27.839490 Updated: 2025-06-05 03:18:36.878723

Job Information

History ID 45d63e8eca00c399
Exit Code None
Command Line
None

Job Metrics

Metric Value

Inputs & Outputs

Type Name ID UUID
Input input_file 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Output html_file 4838ba20a6d86765037a479a8531c348 1b7f777e-d857-4583-a897-825baf901c24
Output text_file 4838ba20a6d867657af9d47b80df7d8d c15d6daf-8de8-441a-8530-35b923344bbc

Job ID: 11ac94870d0bb33abf476f49c90dfe78 (Status: error)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1

Galaxy v24.2 Created: 2025-06-05 03:18:27.934660 Updated: 2025-06-05 03:18:29.821472

Job Information

History ID 45d63e8eca00c399
Exit Code None
Command Line
None

Job Metrics

Metric Value

Inputs & Outputs

Type Name ID UUID
Input library|input_1 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Input reference_genome|own_file 4838ba20a6d86765e8f6ef1a476e048d 8cbf333d-a767-4232-84f4-bd03bc720c4c
Output output 4838ba20a6d867650da9ce8ab60dddeb 36f16d06-a16e-43bf-b6f0-545eba70f575

Running Jobs

No running jobs found.

New Jobs

No new jobs found.

Queued Jobs

No queued jobs found.

Waiting Jobs

No waiting jobs found.

Compute ID: tubitak-pulsar

Successful Jobs: 0 Failed Jobs: 0 Running Jobs: 0 New Jobs: 0 Queued Jobs: 2 Waiting Jobs: 0
Successful Jobs 0
Failed Jobs 0
Running Jobs 0
New Jobs 0
Queued Jobs 2
Waiting Jobs 0

Successful Jobs

No successful jobs found.

Failed Jobs

No failed jobs found.

Running Jobs

No running jobs found.

New Jobs

No new jobs found.

Queued Jobs

Job ID: 11ac94870d0bb33a3348b3aa6bf7eca0 (Status: queued)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1

Galaxy v24.2 Created: 2025-06-05 03:18:57.102225 Updated: 2025-06-05 03:19:21.069511

Job Information

History ID 45d63e8eca00c399
Exit Code None
Command Line
set -o | grep -q pipefail && set -o pipefail; bowtie2-build --threads ${GALAXY_SLOTS:-4} '/data/share/staging/84476962/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome && ln -s -f '/data/share/staging/84476962/inputs/dataset_8cbf333d-a767-4232-84f4-bd03bc720c4c.dat' genome.fa && ln -f -s '/data/share/staging/84476962/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' input_f.fastq && THREADS=${GALAXY_SLOTS:-4} && if [ "$THREADS" -gt 1 ]; then (( THREADS-- )); fi && bowtie2 -p "$THREADS" -x 'genome' -U 'input_f.fastq' | samtools sort -l 0 -T "${TMPDIR:-.}" -O bam | samtools view --no-PG -O bam -@ ${GALAXY_SLOTS:-1} -o '/data/share/staging/84476962/outputs/dataset_5d9b2af2-2d2f-486c-854c-789f631cac74.dat'

Job Metrics

Metric Value

Inputs & Outputs

Type Name ID UUID
Input library|input_1 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Input reference_genome|own_file 4838ba20a6d86765e8f6ef1a476e048d 8cbf333d-a767-4232-84f4-bd03bc720c4c
Output output 4838ba20a6d86765758a45398e5e111f 5d9b2af2-2d2f-486c-854c-789f631cac74

Job ID: 11ac94870d0bb33a79bd45eb2851aad9 (Status: queued)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1

Galaxy v24.2 Created: 2025-06-05 03:18:56.800876 Updated: 2025-06-05 03:19:21.063497

Job Information

History ID 45d63e8eca00c399
Exit Code None
Command Line
ln -s '/data/share/staging/84476960/inputs/dataset_10b9d49a-453f-442d-a764-729c8655ddfb.dat' '1_reads' && mkdir -p '/data/share/staging/84476960/outputs/dataset_b9174561-c440-430e-a8af-2022839faccb_files' && fastqc --outdir '/data/share/staging/84476960/outputs/dataset_b9174561-c440-430e-a8af-2022839faccb_files' --threads ${GALAXY_SLOTS:-2} --dir ${TEMP:-$_GALAXY_JOB_TMP_DIR} --quiet --extract --kmers 7 -f 'fastq' '1_reads' && cp '/data/share/staging/84476960/outputs/dataset_b9174561-c440-430e-a8af-2022839faccb_files'/*/fastqc_data.txt output.txt && cp '/data/share/staging/84476960/outputs/dataset_b9174561-c440-430e-a8af-2022839faccb_files'/*\.html output.html

Job Metrics

Metric Value

Inputs & Outputs

Type Name ID UUID
Input input_file 4838ba20a6d86765d3e24db866381743 10b9d49a-453f-442d-a764-729c8655ddfb
Output html_file 4838ba20a6d86765fda92475f9a61fb8 b9174561-c440-430e-a8af-2022839faccb
Output text_file 4838ba20a6d867650f3a1c8d38ee8b5d 33ef7ed2-8f5c-4c79-9268-a3b587597ef4

Waiting Jobs

No waiting jobs found.

Server: usegalaxy_it

Compute ID: it-pulsar

Successful Jobs: 2 Failed Jobs: 0 Running Jobs: 0 New Jobs: 0 Queued Jobs: 0 Waiting Jobs: 0
Successful Jobs 2
Failed Jobs 0
Running Jobs 0
New Jobs 0
Queued Jobs 0
Waiting Jobs 0

Successful Jobs

Job ID: aa25a9ecfb3ccdfc (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1

Galaxy v24.2 Created: 2025-06-05 04:00:11.956565 Updated: 2025-06-05 04:04:16.650513

Job Information

History ID 83498f8ef6c9dd78
Exit Code 0
Command Line
ln -s '/data/share/it01/staging/4973/inputs/dataset_9f6e431f-7092-4d07-a19b-c72b683e8730.dat' '1_reads' && mkdir -p '/data/share/it01/staging/4973/outputs/dataset_d59551ee-ee80-4e37-9e2d-488eeb603eab_files' && fastqc --outdir '/data/share/it01/staging/4973/outputs/dataset_d59551ee-ee80-4e37-9e2d-488eeb603eab_files' --threads ${GALAXY_SLOTS:-2} --dir ${TEMP:-$_GALAXY_JOB_TMP_DIR} --quiet --extract --kmers 7 -f 'fastq' '1_reads' && cp '/data/share/it01/staging/4973/outputs/dataset_d59551ee-ee80-4e37-9e2d-488eeb603eab_files'/*/fastqc_data.txt output.txt && cp '/data/share/it01/staging/4973/outputs/dataset_d59551ee-ee80-4e37-9e2d-488eeb603eab_files'/*\.html output.html

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/fastqc:0.12.1--hdfd78af_0
Container Type singularity
Cores Allocated 1
Memory Allocated (MB) 5734
Job Start Time 2025-06-05 04:03:54
Job End Time 2025-06-05 04:04:07
Job Runtime (Wall Clock) 13 seconds

Inputs & Outputs

Type Name ID UUID
Input input_file 193913d2def9a80b 9f6e431f-7092-4d07-a19b-c72b683e8730
Output html_file 9ba15762f291058c d59551ee-ee80-4e37-9e2d-488eeb603eab
Output text_file 92b335bde7a30880 3030a7f2-bd23-4d79-8811-126e28e581e7

Job ID: 72d2612d24f98c1c (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1

Galaxy v24.2 Created: 2025-06-05 04:00:12.115596 Updated: 2025-06-05 04:04:09.953780

Job Information

History ID 83498f8ef6c9dd78
Exit Code 0
Command Line
set -o | grep -q pipefail && set -o pipefail; ln -f -s '/data/share/it01/staging/4974/inputs/dataset_9f6e431f-7092-4d07-a19b-c72b683e8730.dat' input_f.fastq && THREADS=${GALAXY_SLOTS:-4} && if [ "$THREADS" -gt 1 ]; then (( THREADS-- )); fi && bowtie2 -p "$THREADS" -x '/cvmfs/data.galaxyproject.org/managed/bowtie2_index/sacCer3/sacCer3' -U 'input_f.fastq' | samtools sort -l 0 -T "${TMPDIR:-.}" -O bam | samtools view --no-PG -O bam -@ ${GALAXY_SLOTS:-1} -o '/data/share/it01/staging/4974/outputs/dataset_3a78655f-acb8-4eaf-abeb-1d071fe61886.dat'

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/mulled-v2-c742dccc9d8fabfcff2af0d8d6799dbc711366cf:a2e4688a25bd1726a756713d5233a63a5ac7f597-0
Container Type singularity
Cores Allocated 1
Memory Allocated (MB) 20480
Job Start Time 2025-06-05 04:02:07
Job End Time 2025-06-05 04:03:53
Job Runtime (Wall Clock) 1 minute

Inputs & Outputs

Type Name ID UUID
Input library|input_1 193913d2def9a80b 9f6e431f-7092-4d07-a19b-c72b683e8730
Output output 1f1194480420c965 3a78655f-acb8-4eaf-abeb-1d071fe61886

Failed Jobs

No failed jobs found.

Running Jobs

No running jobs found.

New Jobs

No new jobs found.

Queued Jobs

No queued jobs found.

Waiting Jobs

No waiting jobs found.

Compute ID: it03-pulsar

Successful Jobs: 2 Failed Jobs: 0 Running Jobs: 0 New Jobs: 0 Queued Jobs: 0 Waiting Jobs: 0
Successful Jobs 2
Failed Jobs 0
Running Jobs 0
New Jobs 0
Queued Jobs 0
Waiting Jobs 0

Successful Jobs

Job ID: 3cb26a62662f1a6f (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1

Galaxy v24.2 Created: 2025-06-05 04:04:44.082874 Updated: 2025-06-05 04:07:20.330626

Job Information

History ID 83498f8ef6c9dd78
Exit Code 0
Command Line
ln -s '/data/share/it/staging/4975/inputs/dataset_9f6e431f-7092-4d07-a19b-c72b683e8730.dat' '1_reads' && mkdir -p '/data/share/it/staging/4975/outputs/dataset_ddb1d60b-36e2-4ad6-915c-1286da3617ab_files' && fastqc --outdir '/data/share/it/staging/4975/outputs/dataset_ddb1d60b-36e2-4ad6-915c-1286da3617ab_files' --threads ${GALAXY_SLOTS:-2} --dir ${TEMP:-$_GALAXY_JOB_TMP_DIR} --quiet --extract --kmers 7 -f 'fastq' '1_reads' && cp '/data/share/it/staging/4975/outputs/dataset_ddb1d60b-36e2-4ad6-915c-1286da3617ab_files'/*/fastqc_data.txt output.txt && cp '/data/share/it/staging/4975/outputs/dataset_ddb1d60b-36e2-4ad6-915c-1286da3617ab_files'/*\.html output.html

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/fastqc:0.12.1--hdfd78af_0
Container Type singularity

Inputs & Outputs

Type Name ID UUID
Input input_file 193913d2def9a80b 9f6e431f-7092-4d07-a19b-c72b683e8730
Output html_file ce9c9e037d25eab2 ddb1d60b-36e2-4ad6-915c-1286da3617ab
Output text_file f708d8d39bcba3c1 a7ce39a3-cbc6-406e-b502-bf1acbf9f9ce

Job ID: ec6072fd6b07c65c (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1

Galaxy v24.2 Created: 2025-06-05 04:04:44.199420 Updated: 2025-06-05 04:07:09.861918

Job Information

History ID 83498f8ef6c9dd78
Exit Code 0
Command Line
set -o | grep -q pipefail && set -o pipefail; ln -f -s '/data/share/it/staging/4976/inputs/dataset_9f6e431f-7092-4d07-a19b-c72b683e8730.dat' input_f.fastq && THREADS=${GALAXY_SLOTS:-4} && if [ "$THREADS" -gt 1 ]; then (( THREADS-- )); fi && bowtie2 -p "$THREADS" -x '/cvmfs/data.galaxyproject.org/managed/bowtie2_index/sacCer3/sacCer3' -U 'input_f.fastq' | samtools sort -l 0 -T "${TMPDIR:-.}" -O bam | samtools view --no-PG -O bam -@ ${GALAXY_SLOTS:-1} -o '/data/share/it/staging/4976/outputs/dataset_2ebf72c1-1e67-4997-adfd-5ee1f6fb767c.dat'

Job Metrics

Metric Value
Container ID /cvmfs/singularity.galaxyproject.org/all/mulled-v2-c742dccc9d8fabfcff2af0d8d6799dbc711366cf:a2e4688a25bd1726a756713d5233a63a5ac7f597-0
Container Type singularity

Inputs & Outputs

Type Name ID UUID
Input library|input_1 193913d2def9a80b 9f6e431f-7092-4d07-a19b-c72b683e8730
Output output b6c77193fe1290f5 2ebf72c1-1e67-4997-adfd-5ee1f6fb767c

Failed Jobs

No failed jobs found.

Running Jobs

No running jobs found.

New Jobs

No new jobs found.

Queued Jobs

No queued jobs found.

Waiting Jobs

No waiting jobs found.

Compute ID: Default

Successful Jobs: 2 Failed Jobs: 0 Running Jobs: 0 New Jobs: 0 Queued Jobs: 0 Waiting Jobs: 0
Successful Jobs 2
Failed Jobs 0
Running Jobs 0
New Jobs 0
Queued Jobs 0
Waiting Jobs 0

Successful Jobs

Job ID: 897c3d2f54157b1a (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1

Galaxy v24.2 Created: 2025-06-05 04:07:46.632821 Updated: 2025-06-05 04:09:03.231735

Job Information

History ID 83498f8ef6c9dd78
Exit Code 0
Command Line
ln -s '/data/share/datasets/9/f/6/dataset_9f6e431f-7092-4d07-a19b-c72b683e8730.dat' '1_reads' && mkdir -p '/data/share/jwd/004/4977/outputs/dataset_f04438b1-6c7f-43a9-8ed5-6008568346b8_files' && fastqc --outdir '/data/share/jwd/004/4977/outputs/dataset_f04438b1-6c7f-43a9-8ed5-6008568346b8_files' --threads ${GALAXY_SLOTS:-2} --dir ${TEMP:-$_GALAXY_JOB_TMP_DIR} --quiet --extract --kmers 7 -f 'fastq' '1_reads' && cp '/data/share/jwd/004/4977/outputs/dataset_f04438b1-6c7f-43a9-8ed5-6008568346b8_files'/*/fastqc_data.txt output.txt && cp '/data/share/jwd/004/4977/outputs/dataset_f04438b1-6c7f-43a9-8ed5-6008568346b8_files'/*\.html output.html

Job Metrics

Metric Value
hostname vgcnbwc-worker-ada-xxl-0001.novalocal
Cores Allocated 3
Memory Allocated (MB) 5734
Job Start Time 2025-06-05 04:06:25
Job End Time 2025-06-05 04:06:47
Job Runtime (Wall Clock) 22 seconds
CPU usage time 16.7530940 seconds
CPU user time 14.5847560 seconds
CPU system time 2.1683380 seconds
Number of processes belonging to this cgroup killed by any kind of OOM killer 0

Inputs & Outputs

Type Name ID UUID
Input input_file 193913d2def9a80b 9f6e431f-7092-4d07-a19b-c72b683e8730
Output html_file c592223bfbe4cc39 f04438b1-6c7f-43a9-8ed5-6008568346b8
Output text_file f4798d149d93b237 23f0bf7c-f02d-4f7a-9820-08d24ef89e84

Job ID: 5271b02e871195a5 (Status: ok)

Tool: toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1

Galaxy v24.2 Created: 2025-06-05 04:07:46.791791 Updated: 2025-06-05 04:09:02.163214

Job Information

History ID 83498f8ef6c9dd78
Exit Code 0
Command Line
set -o | grep -q pipefail && set -o pipefail; ln -f -s '/data/share/datasets/9/f/6/dataset_9f6e431f-7092-4d07-a19b-c72b683e8730.dat' input_f.fastq && THREADS=${GALAXY_SLOTS:-4} && if [ "$THREADS" -gt 1 ]; then (( THREADS-- )); fi && bowtie2 -p "$THREADS" -x '/cvmfs/data.galaxyproject.org/managed/bowtie2_index/sacCer3/sacCer3' -U 'input_f.fastq' | samtools sort -l 0 -T "${TMPDIR:-.}" -O bam | samtools view --no-PG -O bam -@ ${GALAXY_SLOTS:-1} -o '/data/share/jwd/004/4978/outputs/dataset_abc302a4-f240-47de-bf2f-0026f906a6b4.dat'

Job Metrics

Metric Value
hostname vgcnbwc-worker-ada-xxl-0000.novalocal
Cores Allocated 8
Memory Allocated (MB) 20480
Job Start Time 2025-06-05 04:06:25
Job End Time 2025-06-05 04:06:45
Job Runtime (Wall Clock) 20 seconds
CPU usage time 46.8358810 seconds
CPU user time 44.0042020 seconds
CPU system time 2.8316780 seconds
Number of processes belonging to this cgroup killed by any kind of OOM killer 0

Inputs & Outputs

Type Name ID UUID
Input library|input_1 193913d2def9a80b 9f6e431f-7092-4d07-a19b-c72b683e8730
Output output 3d3fa11cded2d92c abc302a4-f240-47de-bf2f-0026f906a6b4

Failed Jobs

No failed jobs found.

Running Jobs

No running jobs found.

New Jobs

No new jobs found.

Queued Jobs

No queued jobs found.

Waiting Jobs

No waiting jobs found.